mouse hippocampus slide-seq v2 data Search Results


mouse hippocampus slide-seq v2 data  (Broad Institute Inc)
90
Broad Institute Inc mouse hippocampus slide-seq v2 data
Mouse Hippocampus Slide Seq V2 Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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visium platform  (10X Genomics)
86
10X Genomics visium platform
Visium Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mouse olfactory bulb datasets  (10X Genomics)
86
10X Genomics mouse olfactory bulb datasets
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Mouse Olfactory Bulb Datasets, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mouse olfactory bulb datasets - by Bioz Stars, 2026-08
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data spot single cell data cell simulated dataset 490 mouse brain smart seq  (Spatial Transcriptomics Inc)
86
Spatial Transcriptomics Inc data spot single cell data cell simulated dataset 490 mouse brain smart seq
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Data Spot Single Cell Data Cell Simulated Dataset 490 Mouse Brain Smart Seq, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm39924717-92-2-0?v=Spatial+Transcriptomics+Inc
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data spot single cell data cell simulated dataset 490 mouse brain smart seq - by Bioz Stars, 2026-08
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pdac a  (Spatial Transcriptomics Inc)
86
Spatial Transcriptomics Inc pdac a
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Pdac A, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pmc12371056-794-17-13?v=Spatial+Transcriptomics+Inc
Average 86 stars, based on 1 article reviews
pdac a - by Bioz Stars, 2026-08
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mouse spleen codex dataset  (Mendeley Ltd)
86
Mendeley Ltd mouse spleen codex dataset
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Mouse Spleen Codex Dataset, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pmc13065825-441-13-18?v=Mendeley+Ltd
Average 86 stars, based on 1 article reviews
mouse spleen codex dataset - by Bioz Stars, 2026-08
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data rna seq  (Bio-Rad)
97
Bio-Rad data rna seq
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Data Rna Seq, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm37405912-232-129-125?v=Bio-Rad
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data rna seq - by Bioz Stars, 2026-08
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ip 202 1012 chromium single cell 30 v3 reagent kits  (Illumina Inc)
96
Illumina Inc ip 202 1012 chromium single cell 30 v3 reagent kits
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Ip 202 1012 Chromium Single Cell 30 V3 Reagent Kits, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm37405912-232-89-81?v=Illumina+Inc
Average 96 stars, based on 1 article reviews
ip 202 1012 chromium single cell 30 v3 reagent kits - by Bioz Stars, 2026-08
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truseq rna library preparation kit illumina  (Illumina Inc)
99
Illumina Inc truseq rna library preparation kit illumina
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Truseq Rna Library Preparation Kit Illumina, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm31747599-210-127-132?v=Illumina+Inc
Average 99 stars, based on 1 article reviews
truseq rna library preparation kit illumina - by Bioz Stars, 2026-08
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casecentre slide management application v2.8  (3DHistech ltd)
90
3DHistech ltd casecentre slide management application v2.8
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Casecentre Slide Management Application V2.8, supplied by 3DHistech ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm32348768-229-117-123?v=3DHistech+ltd
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casecentre slide management application v2.8 - by Bioz Stars, 2026-08
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gfp 1020  (AvesLabs)
98
AvesLabs gfp 1020
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Gfp 1020, supplied by AvesLabs, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+hippocampus+slide-seq+v2+data/pm30566853-190-13-10?v=AvesLabs
Average 98 stars, based on 1 article reviews
gfp 1020 - by Bioz Stars, 2026-08
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anti mouse hrp southern biotech  (SouthernBiotech)
95
SouthernBiotech anti mouse hrp southern biotech
STAMarker reveals the domain-specific SVGs on the <t>mouse</t> <t>olfactory</t> <t>bulb</t> dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.
Anti Mouse Hrp Southern Biotech, supplied by SouthernBiotech, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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anti mouse hrp southern biotech - by Bioz Stars, 2026-08
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Image Search Results


STAMarker reveals the domain-specific SVGs on the mouse olfactory bulb dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.

Journal: Nucleic Acids Research

Article Title: STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning

doi: 10.1093/nar/gkad801

Figure Lengend Snippet: STAMarker reveals the domain-specific SVGs on the mouse olfactory bulb dataset. ( A ) Spatial domains identified by STAMarker. The laminar organization of the mouse olfactory bulb is clearly shown. The identified spatial domains were annotated by the Allen Reference Atlas. ( B ) Histogram of the number of spatial domains to which the SVGs identified by STAMarker belong. ( C ) UpSet plot of the numbers of SVGs identified by STAMarker and six compared methods. STAMarker identified 311 SVGs. ( D ) Heatmap showing the eight modules that were clustered by the 67 domain-specific SVGs. ( E ) Visualization of the domain-specific gene modules by the first principal component of the saliency maps. ( F ) Visualization of the representative spatial domain-specific SVGs.

Article Snippet: The human lymph node and mouse olfactory bulb datasets are available at 10x genomics website 10xgenomics.com/resources/datasets hippocampus dataset of the J20 mouse model generated by Slide-seq V2 is accessible at https://singlecell.broadinstitute.org/single_cell/study/SCP1663/cell-type-specific-inference-of-differential-expression-in-spatial-transcriptomics .

Techniques: